Group Members

Research Scientist

Anton Persikov

PhD students

Tony Capra
Jesse Farnham
Zia Khan
Alex Ochoa
Jimin Song
Peng Jiang
Tao Yue

Alumni

Dawn Brooks (PhD, 2002). “Evolution of amino acid composition over deep time: clues in ancient, extant sequences.” Current position: Medical student.

Jessica Fong (PhD, 2005). “Computational methods for predicting coiled-coil protein interactions.” Current position: Staff scientist, National Center for Biotechnology Information, NIH.

Carl Kingsford (PhD, 2005). “Computational approaches to problems in protein structure and function.” Current position: Assistant professor, University of Maryland Computer Science Department.

Elena Zaslavsky (PhD, 2005). “Algorithms for representation and discovery of transcription factor binding sites.” Current position: Research assistant professor, Mt. Sinai School of Medicine.

Robert Osada (PhD, 2006). “Computational methods for predicting transcription factor binding sites.” Current position: Goldman Sachs.

Elena Nabieva (PhD, 2007). “Topology and function in protein interaction networks.” Current position: Postdoctoral fellow in Susan Lindquist’s Lab.

Eric Banks (PhD, 2009). “Algorithms for analyzing and interrogating protein interaction networks.” Current position: Broad Institute.

Tony Capra (PhD, 2009). “ Algorithms for the identification of functional sites in proteins.”

Kam Jim (MS, 2002).

Nick Jacobson (MS, Chemistry, 2005).