Group Members
Post-PhDs
- Dario Ghersi (American-Italian Cancer Foundation Fellow)
- Anton Persikov
PhD students
- Jesse Farnham
- Peng Jiang
- Shilpa Nadimpalli
- Alex Ochoa
- Yuri Pritykin
- Pawel Przytycki
- Josh Wetzel
Alumni
- Dawn Brooks (PhD, 2002). “Evolution of amino
acid composition over deep time: clues in ancient, extant sequences.”
Current position: Physician.
- Jessica Fong (PhD, 2005). “Computational methods for predicting
coiled-coil protein interactions.”
Current position: Software engineer, Google Pittsburgh.
- Carl Kingsford (PhD, 2005). “Computational approaches to
problems in protein structure and function.”
Current position: Associate professor, Carnegie Mellon, School of
Science Department.
- Elena Zaslavsky (PhD, 2005). “Algorithms for representation
and discovery of transcription factor binding sites.” Current
position: Research assistant professor, Mt. Sinai School of Medicine.
- Robert Osada (PhD, 2006). “Computational methods for predicting
transcription factor binding sites.” Current position: Goldman Sachs.
- Elena Nabieva (PhD, 2007). “Topology and function in
protein interaction networks.” Current position:
Bioinformatician in the Laboratory for Evolutionary Genomics, Moscow
State University.
- Eric Banks (PhD, 2009). “Algorithms for analyzing and interrogating
protein interaction networks.” Current position: Team Leader in
the Genome Sequencing and Analysis Program at
the Broad Institute.
- Tony Capra (PhD, 2009). “ Algorithms for the identification
of functional sites in proteins.” Current position: Assistant
professor, Center for Human Genetics and Department of Biomedical Informatics, Vanderbilt University.
- Zia Khan (PhD, 2011). “ Efficient algorithms for liquid
chromatography coupled mass spectrometry based protein quantification.” Current position: Postdoctoral
fellow with Yoav Gilad, University of Chicago.
- Jimin Song (PhD, 2012). “ Network-based analysis of protein
function.” Current position: Postdoctoral
fellow with Kevin Chen at Rutgers.
- Kam Jim (MS, 2002).
- Nick Jacobson (MS, Chemistry, 2005).
- Tao Yue (MA, 2010).