Monday, February 13, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Adaptive Ocean Sampling: Optimal Use of Mobile Sensors to Study Physical and Biological Dynamics
Naomi Leonard, Mechanical & Aerospace Engineering, Princeton University

Wednesday, February 15, 2006, 12:30
Computation And Data Analysis In Biology And Information Sciences Small Auditorium (Room 105)
Host: Steven Kleinstein

Analyzing Time Course Datasets to Discover Complex Temporal Invariants [view abstract].
Bud Mishra, Courant Institute of Mathematical Sciences, New York University

Monday, February 20, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Computational Techniques for Stochastic Source-to-Dose Modeling of Human Exposures [view abstract].
Sastry Isukapalli, Evironmental and Occupational Health Sciences Institute (EOHSI), UMDNJ-RW Johnson Medical School and

Wednesday, February 22, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

A Combinatorial Optimization Approach to Motif Finding [view abstract].
Elena Zaslavsky, Computer Science, Princeton University

Monday, February 27, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

The Difference Between Genetic Regulatory Networks and the WWW Structures [view abstract].
Yoram Louzoun, Math Department, Bar Ilan University, Israel

Wednesday, March 1, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Mechanistic Pathway Modeling & Simulation for Predictive Toxicology [view abstract].
Bart Hendriks, Pfizer

Monday, March 6, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Collective Motion and Decision-Making in Animal Groups [view abstract].
Iain Couzin, Department of Zoology, University of Oxford

Wednesday, March 8, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Metabolic Profiling of Parasitic Infection and Psychosocial Challenges [view abstract].
Burton H. Singer, Office of Population Research, Princeton University

Monday, March 13, 2006, 12:30pm
Interdisciplinary Computational Seminar Small Auditorium (Room 105)
Host: Steven Kleinstein

Visualization with Contextual Emphasis in Scientific Data
Michael Burns, Computer Science, Princeton University

Wednesday, March 15, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Learning Predictive Models of Gene Regulation
Christina Leslie, Center for Computational Biology and Bioinformatics, Columbia University

Monday, March 27, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

An Elastic Rod Model for Anguilliform Swimming [view abstract].
Tyler McMillen, Program in Applied and Computational Mathematics, Princeton University

Wednesday, March 29, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Molecular Mechanisms of the Malaria Parasite Plasmodium Falciparum [view abstract].
Manuel Llinás, Department of Molecular Biology, Lewis-Sigler Institute for Integrative Genomics, Princeton Universi

Monday, April 3, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Transport, Mixing and Coherent Structures in Chaotic Flows [view abstract].
Francois Lekien, Mechanical & Aerospace Engineering, Princeton University

Wednesday, April 5, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Identifying Drug-Drug Interactions: Power of the Population Approach [view abstract].
Amit Roy, Bristol Myers-Squibb

Friday, April 7, 2006, 12:30 P.M.
Special Seminar Room 302
Host: Steven Kleinstein

Developing scalable code for scientific computing on parallel machines [view abstract].
Deborah Weisser, Ph.D., Pittsburgh Supercomputing Center (PSC)

Monday, April 10, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Design of High Resolution and Adaptive Methods for Partial Differential Equations
Phil Colella, Lawrence Berkeley National Laboratory

Wednesday, April 12, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Evidence for Extensive Natural Selection on Secondary Structure of mRNA
Barry Cohen, Computer Science, New Jersey Institute of Technology

Monday, April 17, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Computation, Machine Learning and BioMarker Discovery in High-Throughput Proteomics [view abstract].
Daniel Fasulo, Project Manager, Siemens Corporate Research

Wednesday, April 19, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Abstract NF-kappaB Oscillations and Cell-to-Cell Variability [view abstract].
Fernand Hayot and Ciriyam Jayaprakash, Mount Sinai School of Medicine and Ohio State University

Monday, April 24, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Descriptions of Electrons Beyond Density Functional Theory [view abstract].
Emily Carter, MAE and PACM, Princeton University

Wednesday, April 26, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

Query-Driven Search Methods for Large Microarray Databases [view abstract].
Matt Hibbs, Computer Science, Princeton University

Monday, May 1, 2006, 12:30pm
Interdisciplinary Computational Seminar Room 302
Host: Steven Kleinstein

Tracking Thoughts with Functional MRI [view abstract].
Ken Norman, Department of Psychology, Princeton University

Wednesday, May 3, 2006, 12:30pm
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Steven Kleinstein

From Protein Structures to Function Prediction [view abstract].
Thomas Funkhouser, Computer Science, Princeton University

Monday, May 8, 2006, 12:30 pm
A Glance At Fortran 2003+ Room 302
Host: Steven Kleinstein

A Glance at Fortran 2003+ [view abstract].
Aleksandar Donev

Monday, September 18, 2006, 12:30
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Status & Challenges in Quantum Mechanics Based Modeling of Materials Behavior [view abstract].
Emily A. Carter, Department of Mechanical and Aerospace Engineering and Program in Applied and Computational Mathemat

Wednesday, September 20, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Learning of predictive models of global transcriptional dynamics with application to the extreemophile Halobacterium NRC-1 [view abstract].
Richard Bonneau, NYU Asst. Prof Dept Biology/Computer Science

Monday, September 25, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Optimization and Data Mining Approaches to Seizure Prediction in Epilepsy Research [view abstract].
W. Art Chaovalitwongse, Rutgers University, Department of Industrial and Systems Engineering

Wednesday, September 27, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Protein Modeling in the Structural Genomics Era [view abstract].
Donald Petrey, Center for Computational Biology and Bioinformatics (Honig Lab), Columbia University

Monday, October 2, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

No Seminar --- Yom Kippur

Wednesday, October 4, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Gene Hierarchies from High-Dimensional Phenotyping [view abstract].
Florian Markowetz, Lewis-Sigler Institute, Princeton University

Monday, October 9, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Quantitative Clinical Pharmacology: New Horizons in Integrating Exposure/Response in Clinical Development [view abstract].
Rajesh Krishna, Merck

Wednesday, October 11, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 302
Host: Elena Zaslavsky

Modeling Science: Topic models of Scientific Journals and Other Large Text Databases [view abstract].
David Blei, Department of Computer Science, Princeton University

Monday, October 16, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Improving Breast Cancer Diagnosis and Prognosis by Computational Modeling and Image Analysis [view abstract].
David Axelrod, Genetics Department, Rutgers University

Wednesday, October 18, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Computational Modeling of Malarial Parasite Protein Interactions Reveals Function on a Genome-Wide Scale [view abstract].
Chris Stoeckert, Department of Genetics, Center for Bioinformatics, University of Pennsylvania

Monday, October 23, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Tuning One's Sense of Self: How T Cells' Signaling Network Discriminate Dynamically Between Self and Non-Self in the Immune System [view abstract].
Gregorie Altan-Bonnet, Computer Biology & Immunology, Memorial Sloan-Kettering Cancer Center

Wednesday, October 25, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Title currently unavailable.
Terry Gaasterland, Scripps Genome Center, University of California – San Diego

Wednesday, November 1, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

No Seminar --- Fall Break

Monday, November 6, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Functional Genomics of Inflammation in Humans [view abstract].
Steve Calvano, Surgery, University of Medicine and Dentistry of New Jersey

Wednesday, November 8, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Multiscale Modeling of Macromolecular-Assembly Networks [view abstract].
Jose Vilar, Computational Biology Center, Memorial Sloan-Kettering Cancer Center

Monday, November 13, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Design of High Resolution and Adaptive Methods for Partial Differential Equations
Phil Colella, University of California-Lawrence Berkeley Lab

Wednesday, November 15, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Finding Informative Regulatory Elements [view abstract].
Noam Slonim, Lewis-Sigler Institute, Princeton University

Monday, November 20, 2006, 12:30 P.M.
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Integration and Functional Analysis of Microarray Data Sets [view abstract].
Curtis Huttenhower, Computer Science, Princeton University

Wednesday, November 22, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

From Properties of Cellular Networks to Protein Function [view abstract].
Dennis Vitkup, Center for Computational Biology and Bioinformatics, Columbia University

Monday, November 27, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Astronomical Medicine & the Future of High-Dimensional Data Visualization and Analysis Software [view abstract].
Alyssa A. Goodman, Innovative Computing, Astrophysics, Harvard University

Wednesday, November 29, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Analyzing Protein Interaction Networks [view abstract].
Mona Singh, Computer Science, Lewis-Sigler Institute, Princeton University

Monday, December 4, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Simple Dynamics from Complex Data: Model Reduction for Control of Fluids [view abstract].
Clancy Rowley, Department of Mechanical and Aerospace Engineering, Princeton University

Wednesday, December 6, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Prediction and Analysis of Protein and Domain Interactions [view abstract].
Teresa Przytycka, Computational Biology, NIH

Monday, December 11, 2006, 12:30 PM
Interdisciplinary Computational Seminar Room 302
Host: Elena Zaslavsky

Multicellular Heritage, Unicellular Attitude: Computational Studies of the Leukocyte Lifestyle [view abstract].
Thomas B. Kepler, Chief, Division of Computational Biology, Duke University

Wednesday, December 13, 2006, 12:30 PM
Computation And Data Analysis In Biology And Information Sciences Room 402
Host: Elena Zaslavsky

Depletion of Feedback Loops in Large Scale Biological Networks [view abstract].
Guillermo Cecchi, Computational Biology Center, IBM